Co-expression analysis

Gene ID	PtpAffx.202558.1.S1_at
Gene name	cc-nbs-lrr resistance protein
Homology with Arabidopsis	Similar to At1g27400: 60S ribosomal protein L17 (RPL17A) (HF=2e-2)
Module size	10 genes
NF	0.42
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	0.83	PtpAffx.202558.1.S1_at	pmrna5128	cc-nbs-lrr resistance protein	-	2e-2	At1g27400	60S ribosomal protein L17 (RPL17A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.85	PtpAffx.200783.1.S1_at	pmrna1514	GRAS family transcription factor	-	1e-1	At3g46600	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.84	PtpAffx.224029.1.S1_x_at	pmrna42263	hypothetical protein	-	1e+0	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.90	PtpAffx.209028.1.S1_at	pmrna17878	hypothetical protein	-	8e-1	At1g72260	THI2.1 (THIONIN 2.1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	PtpAffx.216632.1.S1_at	pmrna31543	hypothetical protein	-	2e+1	At3g30222	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.87	PtpAffx.201352.1.S1_at	pmrna2681	hypothetical protein	-	2e+0	At2g30670	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.208681.1.S1_at	pmrna17218	hypothetical protein	-	2e-3	At1g10710	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.89	PtpAffx.222702.1.S1_at	pmrna40280	hypothetical protein	-	2e+0	At3g53290	CYP71B30P	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.212630.1.S1_s_at	pmrna24725	hypothetical protein	-	2e-2	At5g61930	APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	PtpAffx.42652.1.S1_at	CV268229	histone H3	-	1e-1	At1g01370	HTR12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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