Co-expression analysis

Gene ID	PtpAffx.202486.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g21620: early-responsive to dehydration protein-related / ERD protein-related (HF=5e-15)
Module size	10 genes
NF	0.30
%ile	52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.86	PtpAffx.202486.1.S1_at	pmrna4985	hypothetical protein	-	5e-15	At3g21620	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.90	PtpAffx.206613.1.S1_at	pmrna13130	hypothetical protein	-	4e-1	At1g66420	transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.91	PtpAffx.58784.1.S1_at	CV257890	GRAS family transcription factor	-	8e-1	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.206332.1.S1_at	pmrna12571	hypothetical protein	-	1e-9	At3g56100	MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.206221.1.S1_at	pmrna12349	hypothetical protein	-	1e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.90	PtpAffx.18931.1.A1_at	CV228550	-	-	9e-8	At1g80190	PSF1 (PARTNER OF SLD FIVE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.91	PtpAffx.11018.2.A1_a_at	CN549658	hypothetical protein	-	1e-13	At5g13760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.89	PtpAffx.140423.1.A1_at	CV258588	-	-	1e+0	At3g46360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.90	PtpAffx.98646.1.S1_at	DN499665	hypothetical protein	-	4e-1	At1g05740	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.89	PtpAffx.204783.1.S1_at	pmrna9420	hypothetical protein	-	8e-10	At5g58480	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage