CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.202093.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g10370: ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) (HF=6e-2)

Module size 6 genes

NF 0.32

%ile 56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.94 PtpAffx.202093.1.S1_s_at pmrna4169 hypothetical protein - 6e-2 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.55 82.2 0.92 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.50 78.6 0.92 PtpAffx.205723.1.S1_x_at pmrna11295 hypothetical protein - 2e-5 At3g22930 calmodulin, putative O.I. H.G. S.X.
0.33 57.5 0.92 PtpAffx.144812.1.S1_at DN500920 hypothetical protein - 1e+0 At3g04630 WDL1 O.I. H.G. S.X.
0.22 38.3 0.93 PtpAffx.215807.1.S1_at pmrna30208 hypothetical protein - 2e-3 At2g15760 calmodulin-binding protein O.I. H.G. S.X.
0.12 19.6 0.92 PtpAffx.20696.1.S1_at CX654772 - - 4e-5 At1g65690 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.92	PtpAffx.217345.1.S1_s_at	pmrna32563	hypothetical protein	-	2e-9	At4g22030	F-box family protein	O.I.	H.G.	S.X.
0.44	71.9	0.94	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.87304.1.S1_at	CA926327	-	-	1e-3	At3g60440	-	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.200110.1.S1_at	pmrna195	glycosyl transferase family 37	-	3e-15	At2g03210	FUT2 (FUCOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.32	55.2	0.91	PtpAffx.204407.1.S1_at	pmrna8658	hypothetical protein	-	3e-2	At2g45420	LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)	O.I.	H.G.	S.X.
0.26	45.2	0.88	Ptp.3854.1.S1_at	DN487881	hypothetical protein	-	1e-1	At1g58320	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.88	PtpAffx.74086.1.A1_at	CV253644	hypothetical protein	-	4e-4	At2g05940	protein kinase, putative	O.I.	H.G.	S.X.
0.24	41.8	0.90	PtpAffx.224549.1.S1_s_at	pmrna43182	hypothetical protein	-	8e-3	At1g05250	peroxidase, putative	O.I.	H.G.	S.X.
0.24	41.8	0.90	PtpAffx.212032.1.S1_at	pmrna23624	hypothetical protein	-	1e-1	At1g29720	protein kinase family protein	O.I.	H.G.	S.X.
0.23	40.5	0.91	PtpAffx.67763.1.S1_at	DN494117	-	-	4e+0	At3g46310	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 96.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.7 94.7 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1 93.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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