CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.202093.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g10370: ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) (HF=6e-2)

Module size 6 genes

NF 0.32

%ile 56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.94 PtpAffx.202093.1.S1_s_at pmrna4169 hypothetical protein - 6e-2 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.55 82.2 0.92 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.50 78.6 0.92 PtpAffx.205723.1.S1_x_at pmrna11295 hypothetical protein - 2e-5 At3g22930 calmodulin, putative O.I. H.G. S.X.
0.33 57.5 0.92 PtpAffx.144812.1.S1_at DN500920 hypothetical protein - 1e+0 At3g04630 WDL1 O.I. H.G. S.X.
0.22 38.3 0.93 PtpAffx.215807.1.S1_at pmrna30208 hypothetical protein - 2e-3 At2g15760 calmodulin-binding protein O.I. H.G. S.X.
0.12 19.6 0.92 PtpAffx.20696.1.S1_at CX654772 - - 4e-5 At1g65690 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 96.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.7 94.7 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1 93.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.84372.1.S1_at, orthologous to the query gene, PtpAffx.202093.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 TaAffx.84372.1.S1_at At1g10370 - - 3e-4 At1g01100 60S acidic ribosomal protein P1 (RPP1A) O.I. H.G. S.X.
0.80 92.2 Ta.5456.1.A1_at At1g10370 WRKY19-b transcription factor - 4e+0 At4g02730 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.60 81.0 TaAffx.16007.1.S1_at At1g10370 - - 2e+0 At3g22942 AGG2 (G-PROTEIN GAMMA SUBUNIT 2) O.I. H.G. S.X.
0.50 72.4 TaAffx.29213.1.S1_at At1g10370 - - 3e+0 At5g06480 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein O.I. H.G. S.X.
0.50 72.4 TaAffx.112202.1.S1_s_at At1g10370 - - 1e+0 At3g46160 protein kinase-related O.I. H.G. S.X.
0.46 66.8 Ta.28617.1.S1_at At1g10370 - - 7e-7 At4g15470 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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