Co-expression analysis

Gene ID	PtpAffx.202093.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g10370: ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) (HF=6e-2)
Module size	6 genes
NF	0.32
%ile	56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	PtpAffx.202093.1.S1_s_at	pmrna4169	hypothetical protein	-	6e-2	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.92	PtpAffx.204743.1.S1_at	pmrna9337	hypothetical protein	-	3e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.144812.1.S1_at	DN500920	hypothetical protein	-	1e+0	At3g04630	WDL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.93	PtpAffx.215807.1.S1_at	pmrna30208	hypothetical protein	-	2e-3	At2g15760	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.20696.1.S1_at	CX654772	-	-	4e-5	At1g65690	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.7	94.7	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6	94.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the barley gene, HO02C20S_at, orthologous to the query gene, PtpAffx.202093.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	HO02C20S_at	At1g10370	-	-	1e+0	At2g20390	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig24387_at	At1g10370	-	-	1e+0	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig3968_s_at	At1g10370	-	-	3e-45	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select
0.11	9.4	HX04O22u_at	At1g10370	-	-	5e+0	At5g04340	ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)	O.I.	H.G.	S.X.	Please select
0.11	9.4	HVSMEm0018N09r2_at	At1g10370	-	-	4e+0	At4g28840	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	HV_CEb0012P03f_at	At1g10370	-	-	3e+0	At5g17390	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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