Co-expression analysis

Gene ID PtpAffx.202093.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g10370: ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) (HF=6e-2)
Module size 6 genes
NF 0.32
%ile 56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.202093.1.S1_s_atpmrna4169hypothetical protein-6e-2At1g10370ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)O.I.H.G.S.X.
0.5582.20.92PtpAffx.204743.1.S1_atpmrna9337hypothetical protein-3e-1At5g46030unknown proteinO.I.H.G.S.X.
0.5078.60.92PtpAffx.205723.1.S1_x_atpmrna11295hypothetical protein-2e-5At3g22930calmodulin, putativeO.I.H.G.S.X.
0.3357.50.92PtpAffx.144812.1.S1_atDN500920hypothetical protein-1e+0At3g04630WDL1O.I.H.G.S.X.
0.2238.30.93PtpAffx.215807.1.S1_atpmrna30208hypothetical protein-2e-3At2g15760calmodulin-binding proteinO.I.H.G.S.X.
0.1219.60.92PtpAffx.20696.1.S1_atCX654772--4e-5At1g65690harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.794.7GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8386.1.S1_at, orthologous to the query gene, PtpAffx.202093.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6Gma.8386.1.S1_atAt1g10370--9e-1At2g02060transcription factorO.I.H.G.S.X.
0.6786.1GmaAffx.72348.1.S1_atAt1g10370--1e+1At5g05420immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeO.I.H.G.S.X.
0.3650.8Gma.5519.1.S1_atAt1g10370--1e-7At5g08790ATAF2O.I.H.G.S.X.
0.2532.6Gma.4336.1.S1_atAt1g10370--1e+0At3g50070CYCD3O.I.H.G.S.X.
0.1923.7Gma.9225.1.S1_atAt1g10370--1e+0At5g03050unknown proteinO.I.H.G.S.X.
0.1316.3Gma.4472.1.S1_atAt1g10370--4e-2At1g27730STZ (salt tolerance zinc finger)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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