Co-expression analysis

Gene ID	PtpAffx.201989.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g43640: signal recognition particle 14 kDa family protein / SRP14 family protein (HF=4e-1)
Module size	20 genes
NF	0.31
%ile	54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.86	PtpAffx.201989.1.S1_s_at	pmrna3968	hypothetical protein	-	4e-1	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.91	Ptp.2592.2.S1_x_at	CX185841	thioredoxin h	-	8e-6	At1g45145	ATTRX5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.91	PtpAffx.5082.1.A1_at	CV262317	-	-	2e-1	At1g05205	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.88	PtpAffx.207502.1.S1_at	pmrna14898	hypothetical protein	-	3e-2	At3g44940	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.16450.2.S1_a_at	CV245132	hypothetical protein	-	2e+0	At5g65925	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.33582.1.A1_a_at	BP934623	hypothetical protein	-	2e-16	At4g13010	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.5430.3.S1_a_at	CV242643	hypothetical protein	-	1e-112	At1g19910	AVA-P2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.38274.2.A1_at	CV245302	hypothetical protein	-	4e+0	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.138519.1.S1_at	DN494561	hypothetical protein	-	4e-3	At5g49700	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.201256.1.S1_at	pmrna2492	hypothetical protein	-	1e-6	At1g50620	PHD finger family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.54906.2.A1_at	BP933964	hypothetical protein	-	5e+0	At4g33700	CBS domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.89	Ptp.4526.3.A1_at	CV278191	-	-	5e-88	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.89	PtpAffx.213212.1.S1_at	pmrna25845	hypothetical protein	-	9e-1	At5g43250	NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.93	PtpAffx.56127.2.A1_a_at	CV262320	hypothetical protein	-	4e-7	At1g14150	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.6381.1.S1_at	CV265918	integral membrane single C2 domain protein /// integral membrane single C2 domain protein	-	6e-10	At3g61050	NTMC2T4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	Ptp.5595.1.S1_x_at	CV275868	-	-	3e-2	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.90	PtpAffx.213738.1.S1_at	pmrna26814	hypothetical protein	-	1e-2	At2g38580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.205027.1.S1_at	pmrna9953	hypothetical protein	-	1e-12	At5g06100	MYB33 (MYB DOMAIN PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.692.30.A1_at	CV268251	-	-	3e-8	At1g19397	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.91	Ptp.24.1.S1_s_at	CV237044	hypothetical protein	-	2e-36	At5g64130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.3	81.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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