Co-expression analysis

Gene ID	PtpAffx.201943.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g09040: RNA recognition motif (RRM)-containing protein (HF=2e-3)
Module size	6 genes
NF	0.06
%ile	13.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.81	PtpAffx.201943.1.S1_at	pmrna3873	hypothetical protein	-	2e-3	At4g09040	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.96	Ptp.2132.2.A1_a_at	CV273144	hypothetical protein	-	9e-1	At2g45740	PEX11D	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	Ptp.2652.1.A1_s_at	CV251557	hypothetical protein	-	2e-9	At2g46540	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.95	Ptp.4068.1.A1_at	CV263283	hypothetical protein	-	7e-15	At2g02050	NADH-ubiquinone oxidoreductase B18 subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.94	Ptp.5357.1.S1_at	CV237205	hypothetical protein	-	5e-69	At4g17530	ATRAB1C	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.89	Ptp.7355.1.S1_at	CX174270	hypothetical protein	-	3e-24	At1g01710	acyl-CoA thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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