Co-expression analysis

Gene ID PtpAffx.201826.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g21440: mutase family protein (HF=2e-14)
Module size 7 genes
NF 0.12
%ile 23.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4369.70.80PtpAffx.201826.1.S1_atpmrna3639hypothetical protein-2e-14At1g21440mutase family proteinO.I.H.G.S.X.
0.4067.00.86PtpAffx.24667.1.A1_atCV251328--1e+0At3g30220unknown proteinO.I.H.G.S.X.
0.2543.60.86PtpAffx.208971.1.S1_atpmrna17780--1e-9At1g66860hydrolaseO.I.H.G.S.X.
0.2340.50.87PtpAffx.220909.1.S1_atpmrna37384hypothetical protein-1e+0At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1118.10.84PtpAffx.214620.1.S1_atpmrna28411hypothetical protein-7e-2At3g28640pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.0711.60.82PtpAffx.18316.1.A1_atCV253468hypothetical protein-5e-11At1g68570proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.058.30.82PtpAffx.211888.1.S1_atpmrna23343--4e+0At3g52350D111/G-patch domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage