Co-expression analysis

Gene ID	PtpAffx.20179.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g16240: SYP51 (SYNTAXIN OF PLANTS 51) (HF=1e+0)
Module size	29 genes
NF	0.28
%ile	50.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.7	0.94	PtpAffx.20179.2.S1_at	CK106413	hypothetical protein	-	1e+0	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.201548.1.S1_at	pmrna3043	hypothetical protein	-	2e-11	At1g76350	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	PtpAffx.202156.1.S1_s_at	pmrna4311	hypothetical protein	-	1e-50	At3g60800	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.218492.1.S1_s_at	pmrna34135	hypothetical protein	-	2e-23	At5g46410	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.95	PtpAffx.22348.1.S1_s_at	AI165753	-	-	1e-22	At5g48380	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	Ptp.4717.1.S1_at	CF229719	hypothetical protein	-	7e-7	At2g43680	IQD14	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	PtpAffx.213906.1.S1_x_at	pmrna27116	hypothetical protein	-	7e-9	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.96	PtpAffx.249.484.S1_at	DN494330	hypothetical protein	-	2e-67	At1g48900	signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	Ptp.825.2.S1_at	BU862707	-	-	4e-26	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	PtpAffx.204155.1.S1_s_at	pmrna8187	hypothetical protein	-	2e+0	At5g07790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	Ptp.4212.1.S1_a_at	DN502730	-	-	9e-2	At3g10820	DNA binding / protein binding / transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.162816.1.S1_at	CX185286	hypothetical protein	-	3e-23	At1g79440	ALDH5F1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.83548.1.S1_at	CK091503	hypothetical protein	-	8e-19	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.208153.1.S1_at	pmrna16202	hypothetical protein	-	3e-8	At4g14920	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.223112.1.S1_at	pmrna40941	hypothetical protein	-	4e-9	At5g61010	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.97	Ptp.4320.1.S1_at	CN523651	hypothetical protein	-	3e-8	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.221573.1.S1_x_at	pmrna38525	hypothetical protein	-	1e-4	At5g52530	dentin sialophosphoprotein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.221573.1.S1_at	pmrna38525	hypothetical protein	-	1e-4	At5g52530	dentin sialophosphoprotein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.68160.2.S1_a_at	BU886616	hypothetical protein	-	2e-20	At2g42810	PP5.2 (PROTEIN PHOSPHATASE 5.2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	PtpAffx.72988.1.S1_at	CK107497	hypothetical protein	-	7e-73	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.96	PtpAffx.123370.1.S1_s_at	AJ779213	hypothetical protein	-	1e+0	At4g08790	nitrilase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	Ptp.6294.1.S1_s_at	CF118987	hypothetical protein	-	1e-41	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.97	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	PtpAffx.206211.1.S1_x_at	pmrna12333	hypothetical protein	-	2e-19	At3g13060	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.97	PtpAffx.3847.4.A1_s_at	BU820394	hypothetical protein	-	2e-15	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	PtpAffx.126087.1.S1_at	AJ775746	hypothetical protein	-	6e-34	At4g30600	signal recognition particle receptor alpha subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.97	Ptp.6294.1.S1_a_at	CF118987	hypothetical protein	-	1e-41	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.96	PtpAffx.222642.1.S1_s_at	pmrna40188	hypothetical protein	-	2e-12	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.96	PtpAffx.210864.1.S1_x_at	pmrna21339	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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