Co-expression analysis

Gene ID	PtpAffx.201655.1.S1_s_at
Gene name	GRAS family transcription factor /// GRAS family transcription factor
Homology with Arabidopsis	Similar to At5g41920: scarecrow transcription factor family protein (HF=4e-4)
Module size	6 genes
NF	0.15
%ile	29.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.91	PtpAffx.201655.1.S1_s_at	pmrna3288	GRAS family transcription factor /// GRAS family transcription factor	-	4e-4	At5g41920	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.201671.1.S1_at	pmrna3329	hypothetical protein	-	1e-36	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.90	PtpAffx.207493.1.S1_at	pmrna14878	hypothetical protein	-	3e-5	At1g17750	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.203981.1.S1_at	pmrna7854	-	-	9e-6	At5g37690	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.90	Ptp.1352.1.S1_at	BU871647	hypothetical protein	-	9e-1	At5g39260	ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.90	Ptp.7496.1.S1_at	DN495487	hypothetical protein	-	3e+0	At3g18518	RTFL20 (ROTUNDIFOLIA LIKE 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	98.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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