Co-expression analysis

Gene ID PtpAffx.201518.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g42940: DNA-binding family protein (HF=2e-1)
Module size 6 genes
NF 0.59
%ile 89.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.97PtpAffx.201518.1.S1_atpmrna2994hypothetical protein-2e-1At2g42940DNA-binding family proteinO.I.H.G.S.X.
0.9199.20.96PtpAffx.58064.1.S1_atCF234724f-box family protein-1e-16At4g24060Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.8096.00.97PtpAffx.90771.1.A1_atCK092819f-box family protein-3e-1At4g24060Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.7393.60.97Ptp.5552.1.S1_s_atAI161787hypothetical protein-4e-1At1g66070translation initiation factor-relatedO.I.H.G.S.X.
0.5784.20.97PtpAffx.16980.1.A1_atCK095992hypothetical protein-5e+0At3g02310SEP2 (SEPALLATA 2)O.I.H.G.S.X.
0.2950.50.96PtpAffx.81247.1.S1_s_atCV267779hypothetical protein-2e+0At3g62580-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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