Co-expression analysis

Gene ID	PtpAffx.201518.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g42940: DNA-binding family protein (HF=2e-1)
Module size	6 genes
NF	0.59
%ile	89.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.97	PtpAffx.201518.1.S1_at	pmrna2994	hypothetical protein	-	2e-1	At2g42940	DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.96	PtpAffx.58064.1.S1_at	CF234724	f-box family protein	-	1e-16	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.97	PtpAffx.90771.1.A1_at	CK092819	f-box family protein	-	3e-1	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.97	Ptp.5552.1.S1_s_at	AI161787	hypothetical protein	-	4e-1	At1g66070	translation initiation factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.16980.1.A1_at	CK095992	hypothetical protein	-	5e+0	At3g02310	SEP2 (SEPALLATA 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.81247.1.S1_s_at	CV267779	hypothetical protein	-	2e+0	At3g62580	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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