Co-expression analysis

Gene ID	PtpAffx.201423.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g53750: ACT3 (actin 3) (HF=3e-10)
Module size	6 genes
NF	0.58
%ile	88.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.89	PtpAffx.201423.1.S1_at	pmrna2810	hypothetical protein	-	3e-10	At3g53750	ACT3 (actin 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.33328.1.A1_a_at	CV239473	-	-	1e+0	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.88	PtpAffx.223428.1.S1_at	pmrna41431	-	-	8e-1	At3g57770	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.88	PtpAffx.86522.1.S1_at	BU882907	-	-	4e+0	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.88	PtpAffx.213927.1.S1_at	pmrna27155	hypothetical protein	-	6e+0	At5g16940	carbon-sulfur lyase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.88	PtpAffx.29064.1.A1_at	DN490400	-	-	1e+0	At2g15130	plant basic secretory protein (BSP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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