Co-expression analysis

Gene ID	PtpAffx.201336.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g34882: - (HF=8e-1)
Module size	8 genes
NF	0.14
%ile	27.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.83	PtpAffx.201336.1.S1_at	pmrna2651	hypothetical protein	-	8e-1	At5g34882	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.125658.1.A1_at	DN487640	-	-	1e+0	At1g79880	La domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.87	PtpAffx.224477.1.S1_x_at	pmrna43049	hypothetical protein	-	5e-9	At1g22130	AGL104 (AGAMOUS-LIKE 104)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.86	PtpAffx.215559.1.S1_at	pmrna29822	-	-	2e+0	At3g57640	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.85	PtpAffx.114706.1.A1_at	CV247147	hypothetical protein	-	5e+0	At5g08640	FLS (FLAVONOL SYNTHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.86	PtpAffx.205140.1.S1_at	pmrna10177	hypothetical protein	-	5e-1	At2g40440	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.87	PtpAffx.220689.1.S1_at	pmrna37099	-	-	4e+0	At1g64142	CPuORF23 (Conserved peptide upstream open reading frame 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.85	PtpAffx.206465.1.S1_at	pmrna12820	hypothetical protein	-	3e+0	At5g40620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	97.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.9	97.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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