Co-expression analysis

Gene ID PtpAffx.201300.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g13224: RNA recognition motif (RRM)-containing protein (HF=1e-34)
Module size 7 genes
NF 0.59
%ile 89.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.97PtpAffx.201300.1.S1_s_atpmrna2582hypothetical protein-1e-34At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.6791.10.97PtpAffx.1276.1.S1_atCK091051hypothetical protein-9e-73At5g26751ATSK11O.I.H.G.S.X.
0.5984.90.97PtpAffx.85760.1.S1_s_atCX181147hypothetical protein-6e-6At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.5380.50.97PtpAffx.163113.1.S1_s_atCX182719hypothetical protein-2e-4At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4471.90.98PtpAffx.218468.1.S1_atpmrna34094hypothetical protein-0At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.4268.60.97PtpAffx.120301.1.S1_atCF235521--9e-2At1g54360TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)O.I.H.G.S.X.
0.4067.00.97PtpAffx.146172.1.S1_atCF228310hypothetical protein-8e-18At5g09880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.193.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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