Co-expression analysis

Gene ID PtpAffx.201216.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g37850: basic helix-loop-helix (bHLH) family protein (HF=3e-7)
Module size 6 genes
NF 0.17
%ile 32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4471.90.87PtpAffx.201216.1.S1_atpmrna2414hypothetical protein-3e-7At4g37850basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3357.50.88PtpAffx.203637.1.S1_atpmrna7214hypothetical protein-7e-35At1g11880transferase, transferring hexosyl groupsO.I.H.G.S.X.
0.2950.50.88PtpAffx.201998.1.S1_atpmrna3986hypothetical protein-6e-1At3g53650histone H2B, putativeO.I.H.G.S.X.
0.2034.60.87PtpAffx.26689.2.S1_atAI163264hypothetical protein-1e-22At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.S.X.
0.1932.70.87Ptp.3848.1.S1_atDN498717--3e+0At1g59722unknown proteinO.I.H.G.S.X.
0.0812.90.87PtpAffx.207645.1.S1_atpmrna15165hypothetical protein-2e-56At3g07990SCPL27 (serine carboxypeptidase-like 27)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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