Co-expression analysis

Gene ID PtpAffx.201013.1.S1_at
Gene name lysine/histidine transporter
Homology with ArabidopsisSimilar to At5g40780: LHT1 (HF=1e-21)
Module size 13 genes
NF 0.33
%ile 58.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.90PtpAffx.201013.1.S1_atpmrna1989lysine/histidine transporter-1e-21At5g40780LHT1O.I.H.G.S.X.
0.6791.10.92PtpAffx.23587.2.A1_a_atCV253516NAC domain protein, IPR003441-4e-4At2g33480ANAC041 (Arabidopsis NAC domain containing protein 41)O.I.H.G.S.X.
0.5582.20.94PtpAffx.210577.1.S1_atpmrna20746hypothetical protein-4e-32At3g48195phox (PX) domain-containing proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.1257.2.A1_atCV236343hypothetical protein-6e-34At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.3863.70.94PtpAffx.102994.1.S1_atCV266619hypothetical protein-9e-24At1g07510ftsh10 (FtsH protease 10)O.I.H.G.S.X.
0.2950.50.94PtpAffx.204768.1.S1_atpmrna9390hypothetical protein-7e-14At5g09620octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.H.G.S.X.
0.2850.50.94PtpAffx.28713.1.A1_atCV258396hypothetical protein-1e-5At4g12570UPL5 (UBIQUITIN PROTEIN LIGASE 5)O.I.H.G.S.X.
0.2850.50.93PtpAffx.201053.1.S1_atpmrna2074oligopeptide transporter OPT family-3e-103At3g27020YSL6 (YELLOW STRIPE LIKE 6)O.I.H.G.S.X.
0.2340.50.94PtpAffx.206232.1.S1_atpmrna12368hypothetical protein-9e-22At3g09470-O.I.H.G.S.X.
0.2238.30.92PtpAffx.8610.2.A1_atCV245541--5e-9At5g60410SIZ1O.I.H.G.S.X.
0.2136.50.95PtpAffx.205002.1.S1_atpmrna9897hypothetical protein-1e-17At2g44280-O.I.H.G.S.X.
0.1830.80.92Ptp.7467.1.S1_a_atCV240722hypothetical protein-1e-26At3g53120VPS37-1O.I.H.G.S.X.
0.1830.80.92PtpAffx.5968.1.S1_a_atCV258797hypothetical protein-7e-13At1g01360unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.482.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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