Co-expression analysis

Gene ID PtpAffx.200992.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g27400: pectate lyase family protein (HF=7e-29)
Module size 6 genes
NF 0.44
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.89PtpAffx.200992.1.S1_s_atpmrna1952hypothetical protein-7e-29At3g27400pectate lyase family proteinO.I.H.G.S.X.
0.6791.10.94PtpAffx.44563.1.A1_s_atCV253088hypothetical protein-4e-7At2g47500ATP binding / microtubule motorO.I.H.G.S.X.
0.5380.50.95PtpAffx.86423.1.S1_atCF232732multicopper oxidase-6e-6At5g66920sks17 (SKU5 Similar 17)O.I.H.G.S.X.
0.4471.90.97Ptp.6384.1.S1_a_atCV265840hypothetical protein-1e-19At1g46480WOX4 (WUSCHEL RELATED HOMEOBOX 4)O.I.H.G.S.X.
0.2747.10.95PtpAffx.208347.1.S1_atpmrna16595hypothetical protein-7e-32At3g21530endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.2441.80.94Ptp.5491.1.S1_atCV268895hypothetical protein-3e+0At5g65580unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.998.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.397.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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