Co-expression analysis

Gene ID PtpAffx.200899.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g14590: emb2739 (embryo defective 2739) (HF=2e-3)
Module size 6 genes
NF 0.18
%ile 33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.93PtpAffx.200899.1.S1_atpmrna1767hypothetical protein-2e-3At4g14590emb2739 (embryo defective 2739)O.I.H.G.S.X.
0.3559.70.94PtpAffx.139439.1.S1_atCX179299hypothetical protein-1e-7At4g25500ATRSP35O.I.H.G.S.X.
0.1729.10.95PtpAffx.32240.1.S1_atBP933424hypothetical protein-4e-2At3g24050GATA transcription factor 1 (GATA-1)O.I.H.G.S.X.
0.1423.50.94PtpAffx.119501.1.A1_s_atBP930082--1e+0At5g02510unknown proteinO.I.H.G.S.X.
0.1423.50.94PtpAffx.144596.1.S1_atCK090451hypothetical protein-1e-20At3g48470EMB2423 (EMBRYO DEFECTIVE 2423)O.I.H.G.S.X.
0.069.80.94PtpAffx.162631.1.S1_atCF233360hypothetical protein-3e-21At3g07370CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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