Co-expression analysis

Gene ID PtpAffx.200879.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g26760: CYCB1 (HF=2e-6)
Module size 6 genes
NF 0.60
%ile 90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.200879.1.S1_atpmrna1723hypothetical protein-2e-6At2g26760CYCB1O.I.H.G.S.X.
0.6388.10.95Ptp.759.1.S1_atCV259673tubulin alpha-7 chain-1e-82At4g14960TUA6O.I.H.G.S.X.
0.5582.20.95Ptp.5638.1.S1_atDN489006hypothetical protein-6e-14At1g76310CYCB2O.I.H.G.S.X.
0.5078.60.94PtpAffx.20278.2.A1_s_atCV244932hypothetical protein-3e-20At4g28950ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)O.I.H.G.S.X.
0.4673.70.95PtpAffx.128825.2.S1_a_atCK096703hypothetical protein-4e-7At5g67270ATEB1C (microtubule end binding protein 1)O.I.H.G.S.X.
0.4673.70.94Ptp.6857.2.S1_s_atCA923790hypothetical protein-1e-1At4g35620CYCB2O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.10.94PtpAffx.2265.10.A1_a_atCV246443hypothetical protein-2e-4At1g20693HMGB2 (HIGH MOBILITY GROUP B 2)O.I.H.G.S.X.
0.6791.10.95PtpAffx.86796.1.A1_atDN490220hypothetical protein-1e-14At2g26180IQD6 (IQ-domain 6)O.I.H.G.S.X.
0.6187.00.95Ptp.4412.2.S1_s_atCV237391hypothetical protein-1e-57At2g25880AtAUR2 (AtAurora2)O.I.H.G.S.X.
0.6086.00.94PtpAffx.36032.1.S1_s_atDN486693hypothetical protein-2e-12At1g04030unknown proteinO.I.H.G.S.X.
0.5984.90.94PtpAffx.202854.1.S1_s_atpmrna5645hypothetical protein-3e-12At1g17480IQD7 (IQ-domain 7)O.I.H.G.S.X.
0.5784.20.92PtpAffx.56737.2.A1_atCX174790hypothetical protein-3e-41At4g33260CDC20.2O.I.H.G.S.X.
0.5582.20.94PtpAffx.203070.1.S1_s_atpmrna6077hypothetical protein-1e-50At3g51280male sterility MS5, putativeO.I.H.G.S.X.
0.5380.50.94PtpAffx.210026.1.S1_atpmrna19760hypothetical protein-1e-4At4g38070bHLH family proteinO.I.H.G.S.X.
0.5380.50.94PtpAffx.203982.1.S1_s_atpmrna7857hypothetical protein-2e-35At1g66250glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.5380.50.90PtpAffx.201400.1.S1_atpmrna2758hypothetical protein-4e-12At4g10630glutaredoxin family proteinO.I.H.G.S.X.
0.5078.60.92PtpAffx.221965.1.S1_atpmrna39103hypothetical protein-7e-75At3g51280male sterility MS5, putativeO.I.H.G.S.X.
0.5078.60.93PtpAffx.212278.1.S1_atpmrna24068hypothetical protein-2e-24At1g50240-O.I.H.G.S.X.
0.5078.60.94PtpAffx.203295.1.S1_s_atpmrna6531high mobility group family-5e-11At4g23800high mobility group (HMG1/2) family proteinO.I.H.G.S.X.
0.5078.60.97PtpAffx.71284.1.S1_atBU837413hypothetical protein-4e-1At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.4673.70.93PtpAffx.202854.1.S1_atpmrna5645hypothetical protein-3e-12At1g17480IQD7 (IQ-domain 7)O.I.H.G.S.X.
0.4673.70.89PtpAffx.203808.1.S1_atpmrna7527hypothetical protein-6e-2At5g45700NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.4471.90.96Ptp.6857.1.S1_s_atBU833205hypothetical protein-6e-9At1g20590cyclin, putativeO.I.H.G.S.X.
0.4471.90.93PtpAffx.20351.2.S1_a_atBU890710hypothetical protein-1e-35At3g54180CDKB1O.I.H.G.S.X.
0.4369.70.91PtpAffx.215465.1.S1_s_atpmrna29674hypothetical protein-3e-4At1g67035unknown proteinO.I.H.G.S.X.
0.4369.70.93PtpAffx.135786.1.S1_s_atCK102421hypothetical protein-2e-8At4g28950ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)O.I.H.G.S.X.
0.4369.70.95PtpAffx.2045.1.S1_atCK093245hypothetical protein-5e-20At1g08560SYP111 (SYNTAXIN OF PLANTS 111)O.I.H.G.S.X.
0.4067.00.87PtpAffx.215405.1.S1_atpmrna29567hypothetical protein-2e-1At2g43945unknown proteinO.I.H.G.S.X.
0.4067.00.91PtpAffx.201451.1.S1_atpmrna2861hypothetical protein-3e-4At1g07120-O.I.H.G.S.X.
0.4067.00.92PtpAffx.153625.1.A1_s_atCV249796hypothetical protein-2e+0At2g37030auxin-responsive family proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.203063.1.S1_atpmrna6067hypothetical protein-6e-16At1g64960bindingO.I.H.G.S.X.
0.4067.00.93PtpAffx.162015.1.A1_atCK089275hypothetical protein-2e-1At1g49420metal ion bindingO.I.H.G.S.X.
0.4067.00.94PtpAffx.225070.1.S1_atpmrna44156hypothetical protein-2e-26At4g13370unknown proteinO.I.H.G.S.X.
0.4067.00.96PtpAffx.201265.1.S1_atpmrna2509hypothetical protein-5e-7At3g20150kinesin motor family proteinO.I.H.G.S.X.
0.3964.60.91PtpAffx.219719.1.S1_atpmrna35724hypothetical protein-2e-45At3g43210TES (TETRASPORE)O.I.H.G.S.X.
0.3863.70.91Ptp.7389.1.S1_atCX174702hypothetical protein-4e-23At4g33270CDC20.1O.I.H.G.S.X.
0.3863.70.92PtpAffx.37552.1.S1_atCV246718hypothetical protein-2e-10At4g15830bindingO.I.H.G.S.X.
0.3661.60.95PtpAffx.109349.1.S1_s_atCN524654hypothetical protein-1e-65At5g56580MKK6 (MAP KINASE KINASE 6)O.I.H.G.S.X.
0.3357.50.92PtpAffx.212294.1.S1_atpmrna24102--1e-14At2g40550ETG1 (E2F TARGET GENE 1)O.I.H.G.S.X.
0.3357.50.92PtpAffx.216286.1.S1_s_atpmrna30953hypothetical protein-3e-10At5g42700transcriptional factor B3 family proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.119259.1.A1_atDN485475hypothetical protein-1e+0At5g44345F-box family protein-relatedO.I.H.G.S.X.
0.3357.50.93Ptp.6456.1.S1_atCF235819hypothetical protein-1e-29At4g02060PRL (PROLIFERA)O.I.H.G.S.X.
0.3255.20.93PtpAffx.150951.1.S1_atCK102387hypothetical protein-2e-30At4g14310-O.I.H.G.S.X.
0.3255.20.93PtpAffx.44495.1.A1_s_atCV230381--3e+0At1g57730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3153.70.92Ptp.3071.1.S1_s_atCA933119hypothetical protein-3e-5At2g05790glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.3153.70.92Ptp.2869.1.A1_atDN493052hypothetical protein-1e-8At1g30690SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.3153.70.93PtpAffx.206208.1.S1_atpmrna12329hypothetical protein-1e-16At2g07170bindingO.I.H.G.S.X.
0.3052.00.90PtpAffx.128047.1.A1_atCV233519hypothetical protein-6e-3At2g16270unknown proteinO.I.H.G.S.X.
0.3052.00.93Ptp.4199.1.S1_s_atDN499411hypothetical protein-4e-1At3g07710-O.I.H.G.S.X.
0.3052.00.93PtpAffx.21773.1.S1_s_atBU895937hypothetical protein-4e-1At4g13570HTA4O.I.H.G.S.X.
0.3052.00.94PtpAffx.211740.1.S1_s_atpmrna23009hypothetical protein-8e-86At1g02730ATCSLD5O.I.H.G.S.X.
0.3052.00.88PtpAffx.211020.1.S1_atpmrna21656hypothetical protein-2e-1At3g03600RPS2 (RIBOSOMAL PROTEIN S2)O.I.H.G.S.X.
0.2950.50.87PtpAffx.222903.1.S1_s_atpmrna40621hypothetical protein-3e-21At1g18550ATP binding / microtubule motorO.I.H.G.S.X.
0.2950.50.90PtpAffx.20161.1.A1_a_atCV266819hypothetical protein-1e-1At1g14150oxygen evolving enhancer 3 (PsbQ) family proteinO.I.H.G.S.X.
0.2950.50.91PtpAffx.40037.1.A1_s_atCV269375hypothetical protein-9e-3At4g02800unknown proteinO.I.H.G.S.X.
0.2950.50.94Ptp.2542.1.S1_atCV255319hypothetical protein-3e-73At3g20060UBC19 (ubiquitin-conjugating enzyme19)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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