Co-expression analysis

Gene ID PtpAffx.200879.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g26760: CYCB1 (HF=2e-6)
Module size 6 genes
NF 0.60
%ile 90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.200879.1.S1_atpmrna1723hypothetical protein-2e-6At2g26760CYCB1O.I.H.G.S.X.
0.6388.10.95Ptp.759.1.S1_atCV259673tubulin alpha-7 chain-1e-82At4g14960TUA6O.I.H.G.S.X.
0.5582.20.95Ptp.5638.1.S1_atDN489006hypothetical protein-6e-14At1g76310CYCB2O.I.H.G.S.X.
0.5078.60.94PtpAffx.20278.2.A1_s_atCV244932hypothetical protein-3e-20At4g28950ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)O.I.H.G.S.X.
0.4673.70.95PtpAffx.128825.2.S1_a_atCK096703hypothetical protein-4e-7At5g67270ATEB1C (microtubule end binding protein 1)O.I.H.G.S.X.
0.4673.70.94Ptp.6857.2.S1_s_atCA923790hypothetical protein-1e-1At4g35620CYCB2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig4958_at, orthologous to the query gene, PtpAffx.200879.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7086.0Contig4958_atAt2g26760--2e+0At1g51560FMN bindingO.I.H.G.S.X.
0.8494.3Contig1147_s_atAt2g26760--6e-15At1g07790HTB1O.I.H.G.S.X.
0.8394.0Contig11402_s_atAt2g26760--1e+1At3g02240unknown proteinO.I.H.G.S.X.
0.7991.4Contig5386_atAt2g26760--3e-3At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.7790.8HT07C05r_s_atAt2g26760--2e+0At1g54140TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)O.I.H.G.S.X.
0.7589.5Contig20402_atAt2g26760--2e-1At1g52720unknown proteinO.I.H.G.S.X.
0.7489.1Contig7429_s_atAt2g26760--5e-8At2g18162CPuORF1 (Conserved peptide upstream open reading frame 1)O.I.H.G.S.X.
0.7287.4Contig409_s_atAt2g26760--3e-4At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.7287.4Contig5059_s_atAt2g26760RNase S-like protein-7e+0At5g35090unknown proteinO.I.H.G.S.X.
0.7187.1Contig12125_atAt2g26760--6e+0At3g07522unknown proteinO.I.H.G.S.X.
0.7086.0Contig11329_atAt2g26760--8e-3At5g44570unknown proteinO.I.H.G.S.X.
0.6784.7Contig10193_atAt2g26760--6e+0At5g59830unknown proteinO.I.H.G.S.X.
0.6581.4rbags1d02_atAt2g26760--2e-2At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.
0.6380.3Contig12582_atAt2g26760--5e-17At5g13010EMB3011 (embryo defective 3011)O.I.H.G.S.X.
0.6380.3Contig23822_atAt2g26760--1e-9At5g36890BGLU42 (BETA GLUCOSIDASE 42)O.I.H.G.S.X.
0.6279.1HA14H02r_atAt2g26760--8e-1At5g35610paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.6178.7Contig15263_atAt2g26760--7e-3At2g23320WRKY15O.I.H.G.S.X.
0.6178.7basd21o15_atAt2g26760--1e+0At2g28671unknown proteinO.I.H.G.S.X.
0.5874.9Contig6625_atAt2g26760--5e-30At5g13030unknown proteinO.I.H.G.S.X.
0.5572.0Contig11781_atAt2g26760--5e-3At5g03460unknown proteinO.I.H.G.S.X.
0.5470.3HVSMEa0006I21r2_x_atAt2g26760--3e-1At1g14315-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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