Co-expression analysis

Gene ID	PtpAffx.200879.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g26760: CYCB1 (HF=2e-6)
Module size	6 genes
NF	0.60
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	PtpAffx.200879.1.S1_at	pmrna1723	hypothetical protein	-	2e-6	At2g26760	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.95	Ptp.759.1.S1_at	CV259673	tubulin alpha-7 chain	-	1e-82	At4g14960	TUA6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	Ptp.5638.1.S1_at	DN489006	hypothetical protein	-	6e-14	At1g76310	CYCB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.20278.2.A1_s_at	CV244932	hypothetical protein	-	3e-20	At4g28950	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.128825.2.S1_a_at	CK096703	hypothetical protein	-	4e-7	At5g67270	ATEB1C (microtubule end binding protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	Ptp.6857.2.S1_s_at	CA923790	hypothetical protein	-	1e-1	At4g35620	CYCB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8436.1.S1_s_at, orthologous to the query gene, PtpAffx.200879.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	Gma.8436.1.S1_s_at	At2g26760	mitotic cyclin /// mitotic cyclin	-	2e-1	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please select
0.75	89.5	Gma.8420.1.S1_at	At2g26760	mitotic cyclin b1-type	-	2e-4	At4g37490	CYCB1	O.I.	H.G.	S.X.	Please select
0.73	88.9	Gma.16501.2.S1_at	At2g26760	-	-	3e-4	At4g31840	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.25145.1.A1_at	At2g26760	-	-	2e-23	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.14069.1.A1_at	At2g26760	-	-	2e+0	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.6998.1.S1_at	At2g26760	-	-	1e+0	At5g50190	-	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.17426.1.S1_s_at	At2g26760	-	-	1e-4	At4g35620	CYCB2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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