Co-expression analysis

Gene ID	PtpAffx.200833.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g26250: proline-rich extensin, putative (HF=1e-3)
Module size	7 genes
NF	0.13
%ile	25.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.87	PtpAffx.200833.1.S1_x_at	pmrna1624	hypothetical protein	-	1e-3	At1g26250	proline-rich extensin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.87	PtpAffx.249.414.S1_at	CV265609	-	-	5e-1	At1g22700	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.87	PtpAffx.110114.1.A1_at	CK091163	-	-	6e-3	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.90	PtpAffx.40862.1.S1_at	BU834664	-	-	7e-2	At1g27300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.80529.1.A1_at	BP936518	-	-	1e-3	At5g18190	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.87	PtpAffx.203651.1.S1_at	pmrna7242	hypothetical protein	-	1e+1	At5g08480	VQ motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.87	PtpAffx.209579.1.S1_at	pmrna18958	hypothetical protein	-	2e-1	At3g52150	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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