Co-expression analysis

Gene ID PtpAffx.200785.1.S1_s_at
Gene name GRAS family transcription factor
Homology with ArabidopsisSimilar to At1g07530: SCL14 (SCARECROW-LIKE 14) (HF=3e-22)
Module size 6 genes
NF 0.28
%ile 49.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.92PtpAffx.200785.1.S1_s_atpmrna1516GRAS family transcription factor-3e-22At1g07530SCL14 (SCARECROW-LIKE 14)O.I.H.G.S.X.
0.3153.70.94PtpAffx.52305.1.S1_a_atCK090487hypothetical protein-2e-6At1g04400CRY2 (CRYPTOCHROME 2)O.I.H.G.S.X.
0.2543.60.95PtpAffx.35633.1.A1_atCV274877nbs-lrr resistance protein-1e-1At5g35610paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.2238.30.93PtpAffx.145807.1.S1_atCX184416ethylene receptor 1-1e-31At2g40940ERS1 (ETHYLENE RESPONSE SENSOR 1)O.I.H.G.S.X.
0.1729.10.93PtpAffx.12097.1.A1_atCV273859hypothetical protein-7e-5At2g40080ELF4 (EARLY FLOWERING 4)O.I.H.G.S.X.
0.1729.10.93PtpAffx.116026.1.S1_atCV253027ethylene receptor 1-3e-36At2g40940ERS1 (ETHYLENE RESPONSE SENSOR 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.794.7GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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