Co-expression analysis

Gene ID	PtpAffx.200722.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g23167: LCR39 (Low-molecular-weight cysteine-rich 39) (HF=5e-1)
Module size	6 genes
NF	0.24
%ile	43.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.95	PtpAffx.200722.1.S1_at	pmrna1390	hypothetical protein	-	5e-1	At3g23167	LCR39 (Low-molecular-weight cysteine-rich 39)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.751.2.S1_at	AI164676	hypothetical protein	-	2e-5	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.206055.1.S1_at	pmrna12000	hypothetical protein	-	2e-18	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	Ptp.6100.1.S1_s_at	CV253262	hypothetical protein	-	1e-13	At3g57090	BIGYIN	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.95	PtpAffx.201197.1.S1_at	pmrna2369	hypothetical protein	-	2e-19	At2g14680	myosin heavy chain-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.95	PtpAffx.208794.1.S1_at	pmrna17436	chromatin remodeling complex subunit	-	2e-93	At3g06010	ATCHR12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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