Co-expression analysis

Gene ID PtpAffx.200696.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g44200: NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") (HF=8e-139)
Module size 8 genes
NF 0.11
%ile 22.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.50.89PtpAffx.200696.1.S1_atpmrna1345hypothetical protein-8e-139At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")O.I.H.G.S.X.
0.3863.70.94PtpAffx.215433.1.S1_s_atpmrna29618hypothetical protein-2e+0At1g36980unknown proteinO.I.H.G.S.X.
0.3357.50.95PtpAffx.207723.1.S1_s_atpmrna15345hypothetical protein-8e-76At2g39750dehydration-responsive family proteinO.I.H.G.S.X.
0.1626.90.96PtpAffx.11619.1.S1_atCV235173--3e-33At4g25680unknown proteinO.I.H.G.S.X.
0.1525.30.94PtpAffx.24898.1.A1_atCV242273hypothetical protein-2e-1Atmg01050-O.I.H.G.S.X.
0.0711.60.94PtpAffx.68666.2.S1_atCV254643hypothetical protein-6e-4At5g17550PEX19-2O.I.H.G.S.X.
0.069.80.95PtpAffx.211268.1.S1_s_atpmrna22106hypothetical protein-5e-66At3g54190-O.I.H.G.S.X.
0.046.90.95PtpAffx.211268.1.S1_atpmrna22106hypothetical protein-5e-66At3g54190-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.293.5GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage