Co-expression analysis

Gene ID PtpAffx.200616.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g79890: helicase-related (HF=2e-55)
Module size 6 genes
NF 0.02
%ile 4.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.85PtpAffx.200616.1.S1_atpmrna1205hypothetical protein-2e-55At1g79890helicase-relatedO.I.H.G.S.X.
0.0812.90.89PtpAffx.201886.1.S1_atpmrna3765hypothetical protein-5e-1At1g77780glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.058.30.87PtpAffx.61190.1.S1_atDN501105hypothetical protein-5e-6At5g39680EMB2744 (EMBRYO DEFECTIVE 2744)O.I.H.G.S.X.
0.046.90.89PtpAffx.223246.1.S1_atpmrna41142bromodomain protein-3e-2At1g58025DNA bindingO.I.H.G.S.X.
0.012.20.86PtpAffx.207744.1.S1_atpmrna15397fasciclin domain-containing protein-4e+0At5g44610MAP18 (Microtubule-associated Protein 18)O.I.H.G.S.X.
0.012.20.89PtpAffx.211711.1.S1_atpmrna22951hypothetical protein-3e-8At4g02010protein kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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