Co-expression analysis

Gene ID	PtpAffx.200604.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g10747: - (HF=3e-1)
Module size	6 genes
NF	0.35
%ile	60.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.84	PtpAffx.200604.1.S1_x_at	pmrna1188	hypothetical protein	-	3e-1	At1g10747	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.88	PtpAffx.24779.1.A1_at	CV246012	hypothetical protein	-	2e+0	At4g12382	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.84	PtpAffx.209581.1.S1_at	pmrna18961	hypothetical protein	-	8e-2	At4g36000	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.84	PtpAffx.218655.1.S1_at	pmrna34351	hypothetical protein	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.84	PtpAffx.218451.1.S1_s_at	pmrna34073	hypothetical protein	-	2e+0	At5g66320	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.83	PtpAffx.115134.1.A1_at	CV231651	-	-	4e+0	At5g48350	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1	95.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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