Co-expression analysis

Gene ID	PtpAffx.200567.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g71190: SAG18 (SENESCENCE ASSOCIATED GENE 18) (HF=2e-39)
Module size	7 genes
NF	0.49
%ile	79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.96	PtpAffx.200567.1.S1_at	pmrna1120	hypothetical protein	-	2e-39	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	Ptp.6945.1.S1_at	CV282639	hypothetical protein	-	6e-38	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.4529.1.S1_at	CK091600	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.4396.1.S1_at	CK091251	hypothetical protein	-	3e-12	At1g76150	maoC-like dehydratase domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.19725.1.S1_at	CN518078	hypothetical protein	-	3e-1	At1g36380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.108517.1.A1_at	CV236445	hypothetical protein	-	3e-14	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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