Co-expression analysis

Gene ID	PtpAffx.200551.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g60120: BGLU27 (BETA GLUCOSIDASE 27) (HF=5e-8)
Module size	6 genes
NF	0.10
%ile	20.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.89	PtpAffx.200551.1.S1_at	pmrna1094	hypothetical protein	-	5e-8	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.218212.1.S1_s_at	pmrna33761	hypothetical protein	-	2e-6	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.89	PtpAffx.218212.1.S1_at	pmrna33761	hypothetical protein	-	2e-6	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.87	Ptp.649.2.A1_at	CV239852	-	-	6e-9	At2g05070	LHCB2.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.87	PtpAffx.10889.1.S1_at	CV283550	hypothetical protein	-	1e-1	At1g72610	GER1 (GERMIN-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.90	PtpAffx.216734.1.S1_at	pmrna31713	bile acid:Na+ symporter family protein	-	4e+0	At4g22600	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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