Co-expression analysis

Gene ID PtpAffx.200510.1.S1_at
Gene name 2-oxoglutarate-dependent dioxygenase
Homology with ArabidopsisSimilar to At1g52820: 2-oxoglutarate-dependent dioxygenase, putative (HF=2e-6)
Module size 6 genes
NF 0.46
%ile 75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.86PtpAffx.200510.1.S1_atpmrna10322-oxoglutarate-dependent dioxygenase-2e-6At1g528202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.7794.90.87PtpAffx.225469.1.S1_s_atpmrna44836cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein-3e-6At3g52970CYP76G1O.I.H.G.S.X.
0.5078.60.90PtpAffx.219298.1.S1_s_atpmrna35177cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein-1e+1At5g55980serine-rich protein-relatedO.I.H.G.S.X.
0.4673.70.87PtpAffx.33411.1.S1_atCA825123cytochrome P450-5e-13At2g42250CYP712A1O.I.H.G.S.X.
0.4471.90.91PtpAffx.224604.1.S1_atpmrna43290hypothetical protein-5e-4At5g04370NAMT1O.I.H.G.S.X.
0.1219.60.89PtpAffx.216782.1.S1_atpmrna31779hypothetical protein-2e-19At5g06900CYP93D1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.995.1GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.894.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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