Co-expression analysis

Gene ID	PtpAffx.200499.1.S1_at
Gene name	anion exchanger family protein
Homology with Arabidopsis	Similar to At1g15460: BOR4 (REQUIRES HIGH BORON 4) (HF=1e-40)
Module size	6 genes
NF	0.07
%ile	14.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.200499.1.S1_at	pmrna1014	anion exchanger family protein	-	1e-40	At1g15460	BOR4 (REQUIRES HIGH BORON 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.91	PtpAffx.211421.1.S1_at	pmrna22379	hypothetical protein	-	1e+0	At2g18880	VEL2 ((VERNALIZATION5/VIN3-LIKE))	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.209323.1.S1_at	pmrna18435	hypothetical protein	-	1e-1	At2g37740	ZFP10 (ZINC-FINGER PROTEIN 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.90	PtpAffx.209182.1.S1_at	pmrna18171	hypothetical protein	-	1e-11	At3g19850	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.90	PtpAffx.218394.1.S1_x_at	pmrna33989	hypothetical protein	-	8e+0	At5g43330	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.89	PtpAffx.3955.3.S1_a_at	CK111128	hypothetical protein	-	1e-3	At1g08310	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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