Co-expression analysis

Gene ID	PtpAffx.200482.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g02405: proline-rich family protein (HF=5e-2)
Module size	6 genes
NF	0.09
%ile	19.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.88	PtpAffx.200482.1.S1_at	pmrna972	hypothetical protein	-	5e-2	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.88	PtpAffx.213854.1.S1_s_at	pmrna27028	hypothetical protein	-	1e+0	At5g07100	WRKY26	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.87	PtpAffx.224788.1.S1_at	pmrna43637	hypothetical protein	-	7e-3	At5g42100	ATBG_PAP	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	PtpAffx.211249.1.S1_at	pmrna22080	-	-	1e-11	At5g24670	catalytic/ hydrolase/ zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.88	PtpAffx.205513.1.S1_s_at	pmrna10897	hypothetical protein	-	3e+0	At5g04470	SIM (SIAMESE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.87	PtpAffx.450.2.S1_at	CV229392	-	-	2e-8	At4g27280	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.3	96.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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