Co-expression analysis

Gene ID	PtpAffx.200421.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g63680: MURE (HF=2e-88)
Module size	6 genes
NF	0.61
%ile	91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.93	PtpAffx.200421.1.S1_at	pmrna846	hypothetical protein	-	2e-88	At1g63680	MURE	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.92	PtpAffx.18678.1.A1_s_at	CV238519	hypothetical protein	-	4e-28	At1g21600	PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.201847.1.S1_at	pmrna3675	hypothetical protein	-	6e-50	At1g21600	PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.208810.1.S1_at	pmrna17470	hypothetical protein	-	5e-1	At1g47780	acyl-protein thioesterase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.212167.1.S1_at	pmrna23858	hypothetical protein	-	4e-124	At3g04260	PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	PtpAffx.205239.1.S1_at	pmrna10384	hypothetical protein	-	6e-12	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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