Co-expression analysis

Gene ID PtpAffx.200419.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g23420: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-28)
Module size 6 genes
NF 0.09
%ile 18.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.75PtpAffx.200419.1.S1_atpmrna843hypothetical protein-2e-28At4g23420short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2441.80.78PtpAffx.49799.1.A1_atCV270749hypothetical protein-1e+0At3g4459060S acidic ribosomal protein P2 (RPP2D)O.I.H.G.S.X.
0.1321.60.78PtpAffx.206986.1.S1_atpmrna13840--8e-1At3g15710signal peptidase, putativeO.I.H.G.S.X.
0.1118.10.79PtpAffx.18183.1.A1_atCV257931--1e-1At1g28570GDSL-motif lipase, putativeO.I.H.G.S.X.
0.1016.30.77PtpAffx.29030.1.S1_atDN501730--3e+0At3g56620integral membrane family protein / nodulin MtN21-relatedO.I.H.G.S.X.
0.023.60.76PtpAffx.209630.1.S1_x_atpmrna19029hypothetical protein-1e-1At2g44000-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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