Co-expression analysis

Gene ID PtpAffx.200385.1.S1_at
Gene name AP2/ERF domain-containing transcription factor
Homology with ArabidopsisSimilar to At4g11140: CRF1 (CYTOKININ RESPONSE FACTOR 1) (HF=9e-13)
Module size 13 genes
NF 0.05
%ile 11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.80.84PtpAffx.200385.1.S1_atpmrna770AP2/ERF domain-containing transcription factor-9e-13At4g11140CRF1 (CYTOKININ RESPONSE FACTOR 1)O.I.H.G.S.X.
0.1423.50.89Ptp.2062.1.A1_atCV236307hypothetical protein-3e-33At1g48430dihydroxyacetone kinase family proteinO.I.H.G.S.X.
0.1321.60.91PtpAffx.11164.1.A1_a_atCX169283hypothetical protein-8e-11At3g01130unknown proteinO.I.H.G.S.X.
0.1321.60.90PtpAffx.101592.1.S1_atCV258751hypothetical protein-4e-20At5g51840unknown proteinO.I.H.G.S.X.
0.0812.90.92PtpAffx.213869.1.S1_atpmrna27053hypothetical protein-4e-89At3g01540DRH1 (DEAD BOX RNA HELICASE 1)O.I.H.G.S.X.
0.0711.60.90PtpAffx.82869.1.A1_atCV229063--4e+0At1g09140SF2/ASF-like splicing modulator (SRP30)O.I.H.G.S.X.
0.069.80.88PtpAffx.217588.1.S1_atpmrna32920hypothetical protein-9e-37At5g57590BIO1 (biotin auxotroph 1)O.I.H.G.S.X.
0.046.90.91PtpAffx.99503.1.S1_s_atCK115008hypothetical protein-1e+0At3g29370unknown proteinO.I.H.G.S.X.
0.046.90.91PtpAffx.48775.2.S1_atBU876759hypothetical protein-1e-12At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.035.20.88PtpAffx.63320.1.A1_atCV244754--1e-1At5g64420DNA polymerase V familyO.I.H.G.S.X.
0.023.60.90PtpAffx.220978.1.S1_s_atpmrna37486hypothetical protein-8e-33At3g17770dihydroxyacetone kinase family proteinO.I.H.G.S.X.
0.023.60.91PtpAffx.213100.1.S1_atpmrna25636hypothetical protein-1e-46At2g45950ASK20 (ARABIDOPSIS SKP1-LIKE 20)O.I.H.G.S.X.
0.012.20.92PtpAffx.2515.1.A1_a_atCV262688--6e+0At5g0951040S ribosomal protein S15 (RPS15D)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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