Co-expression analysis

Gene ID	PtpAffx.200327.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g12300: C2 domain-containing protein (HF=1e-1)
Module size	11 genes
NF	0.19
%ile	36.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.87	PtpAffx.200327.1.S1_at	pmrna650	hypothetical protein	-	1e-1	At5g12300	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.208366.1.S1_s_at	pmrna16637	hypothetical protein	-	4e-27	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.92	PtpAffx.24751.1.A1_at	CV247187	-	-	1e+1	At5g19910	SOH1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.29117.1.A1_s_at	DN488095	hypothetical protein	-	2e+0	At3g32090	transcription factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.89	PtpAffx.204201.1.S1_x_at	pmrna8267	hypothetical protein	-	1e-10	At1g47740	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.91	PtpAffx.29014.1.A1_s_at	DN492118	hypothetical protein	-	6e-2	At5g35670	iqd33 (IQ-domain 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	PtpAffx.90782.1.S1_s_at	CK091819	hypothetical protein	-	2e+0	At1g06920	OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	PtpAffx.74987.1.A1_at	CX173718	-	-	6e-3	At3g48210	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	PtpAffx.8821.1.A1_at	CV247370	hypothetical protein	-	2e-7	At4g15955	epoxide hydrolase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.91	PtpAffx.205301.1.S1_at	pmrna10514	hypothetical protein	-	2e-11	At2g17525	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.88	PtpAffx.37067.1.A1_s_at	CV237204	hypothetical protein	-	2e-15	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8	86.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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