Co-expression analysis

Gene ID PtpAffx.200293.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g22555: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.31
%ile 54.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.82PtpAffx.200293.1.S1_atpmrna583--2e+0At5g22555unknown proteinO.I.H.G.S.X.
0.4673.70.82PtpAffx.217766.1.S1_atpmrna33160hypothetical protein-1e+0At3g59950autophagy 4b (APG4b)O.I.H.G.S.X.
0.2543.60.82PtpAffx.223211.1.S1_atpmrna41088hypothetical protein-2e-1At4g27310zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.2543.60.82PtpAffx.54850.1.A1_atDN486077--9e+0At5g10580unknown proteinO.I.H.G.S.X.
0.2034.60.82PtpAffx.249.265.S1_atCV231208hypothetical protein-4e-1At5g61790calnexin 1 (CNX1)O.I.H.G.S.X.
0.1729.10.82PtpAffx.107844.1.A1_atCV264159--4e-1At5g14440-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.396.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.296.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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