Co-expression analysis

Gene ID PtpAffx.200265.1.S1_at
Gene name AP2/ERF domain-containing transcription factor
Homology with ArabidopsisSimilar to At5g07310: AP2 domain-containing transcription factor, putative (HF=3e-14)
Module size 7 genes
NF 0.62
%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7594.10.96PtpAffx.200265.1.S1_atpmrna513AP2/ERF domain-containing transcription factor-3e-14At5g07310AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.7192.60.96Ptp.2628.1.A1_atAY445917.1hypothetical protein-1e-64At3g27300G6PD5 (glucose-6-phosphate dehydrogenase 5)O.I.H.G.S.X.
0.6791.10.96PtpAffx.64805.1.S1_s_atCX171984hypothetical protein-1e+0At2g4059040S ribosomal protein S26 (RPS26B)O.I.H.G.S.X.
0.5683.90.96Ptp.2628.1.A1_x_atAY445917.1hypothetical protein-1e-64At3g27300G6PD5 (glucose-6-phosphate dehydrogenase 5)O.I.H.G.S.X.
0.5683.90.96PtpAffx.145512.1.S1_atBU820184vacuolar H+-translocating inorganic pyrophosphatase-1e-7At1g15690AVP1O.I.H.G.S.X.
0.5078.60.96PtpAffx.217250.1.S1_atpmrna32437hypothetical protein-3e-1At1g34750protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4471.90.96PtpAffx.48046.1.S1_atAJ775695hypothetical protein-3e-11At1g72160SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.597.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.393.7GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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