Co-expression analysis

Gene ID PtpAffx.200207.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g24240: leucine-rich repeat transmembrane protein kinase, putative (HF=2e-28)
Module size 6 genes
NF 0.56
%ile 86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.97PtpAffx.200207.1.S1_s_atpmrna393hypothetical protein-2e-28At3g24240leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.7192.60.97PtpAffx.36103.1.S1_atCX655509hypothetical protein-7e-1At3g45673unknown proteinO.I.H.G.S.X.
0.6791.10.97PtpAffx.203444.1.S1_atpmrna6862hypothetical protein-5e-44At3g24240leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.6187.00.96PtpAffx.36103.1.S1_a_atCX655509hypothetical protein-7e-1At3g45673unknown proteinO.I.H.G.S.X.
0.4471.90.98PtpAffx.142862.1.S1_atBU884336autoinhibited H+ ATPase /// autoinhibited H+ ATPase-3e-85At4g30190AHA2O.I.H.G.S.X.
0.2441.80.97Ptp.5347.1.S1_x_atDN486427hypothetical protein-1e-7At1g02920GSTF7O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.396.9GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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