Co-expression analysis

Gene ID	PtpAffx.200174.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g52550: - (HF=3e-1)
Module size	6 genes
NF	0.00
%ile	0.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.79	PtpAffx.200174.1.S1_at	pmrna326	hypothetical protein	-	3e-1	At3g52550	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.79	PtpAffx.31086.1.A1_at	CV248545	-	-	1e+0	At1g47470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.80	PtpAffx.217611.1.S1_at	pmrna32949	hypothetical protein	-	2e+1	At5g17170	ENH1 (enhancer of sos3-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.81	PtpAffx.13523.1.S1_at	CK103963	hypothetical protein	-	9e-1	At3g56720	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.78	PtpAffx.39070.1.S1_at	CK097769	hypothetical protein	-	1e-1	At5g40020	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.80	PtpAffx.201613.1.S1_at	pmrna3184	hypothetical protein	-	9e-85	At1g75660	XRN3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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