Co-expression analysis

Gene ID PtpAffx.200088.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g79640: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (HF=8e-134)
Module size 7 genes
NF 0.31
%ile 54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.99PtpAffx.200088.1.S1_atpmrna160hypothetical protein-8e-134At1g79640ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3559.70.99PtpAffx.202880.1.S1_atpmrna5688hypothetical protein-6e-2At3g43250cell cycle control protein-relatedO.I.H.G.S.X.
0.3255.20.99PtpAffx.220148.1.S1_atpmrna36499aquaporin, MIP family-2e-2At3g47440TIP5O.I.H.G.S.X.
0.3255.20.99PtpAffx.203760.1.S1_atpmrna7429hypothetical protein-9e-18At1g11250SYP125 (SYNTAXIN OF PLANTS 125)O.I.H.G.S.X.
0.2950.50.99PtpAffx.219317.1.S1_atpmrna35200hypothetical protein-1e-4At5g13160PBS1 (avrPphB susceptible 1)O.I.H.G.S.X.
0.2238.30.99PtpAffx.200741.1.S1_atpmrna1423hypothetical protein-9e-74At2g29940PDR3 (PLEIOTROPIC DRUG RESISTANCE 3)O.I.H.G.S.X.
0.1525.30.99PtpAffx.218924.1.S1_atpmrna34683autoinhibited calcium ATPase-1e-28At2g41560ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.396.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.393.7GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.092.9GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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