Co-expression analysis

Gene ID	PtpAffx.200088.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g79640: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (HF=8e-134)
Module size	7 genes
NF	0.31
%ile	54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.99	PtpAffx.200088.1.S1_at	pmrna160	hypothetical protein	-	8e-134	At1g79640	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.99	PtpAffx.202880.1.S1_at	pmrna5688	hypothetical protein	-	6e-2	At3g43250	cell cycle control protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.99	PtpAffx.220148.1.S1_at	pmrna36499	aquaporin, MIP family	-	2e-2	At3g47440	TIP5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.99	PtpAffx.203760.1.S1_at	pmrna7429	hypothetical protein	-	9e-18	At1g11250	SYP125 (SYNTAXIN OF PLANTS 125)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.99	PtpAffx.219317.1.S1_at	pmrna35200	hypothetical protein	-	1e-4	At5g13160	PBS1 (avrPphB susceptible 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.99	PtpAffx.200741.1.S1_at	pmrna1423	hypothetical protein	-	9e-74	At2g29940	PDR3 (PLEIOTROPIC DRUG RESISTANCE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.99	PtpAffx.218924.1.S1_at	pmrna34683	autoinhibited calcium ATPase	-	1e-28	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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