Co-expression analysis

Gene ID PtpAffx.19887.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g19320: unknown protein (HF=7e-1)
Module size 18 genes
NF 0.38
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6488.40.90PtpAffx.19887.1.S1_atCK110507hypothetical protein-7e-1At2g19320unknown proteinO.I.H.G.S.X.
0.5582.20.94PtpAffx.4965.1.A1_atCV267447--2e-4At4g35790ATPLDDELTAO.I.H.G.S.X.
0.4975.70.93PtpAffx.71453.1.S1_atBI125151hypothetical protein-4e+0At2g07290unknown proteinO.I.H.G.S.X.
0.4875.40.94PtpAffx.13675.1.A1_atCK096286--4e+0At3g04090SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.4572.30.92PtpAffx.48049.1.S1_atDN489796hypothetical protein-5e+0At5g24410glucosamine/galactosamine-6-phosphate isomerase-relatedO.I.H.G.S.X.
0.4471.90.92Ptp.4891.1.A1_atCV228206hypothetical protein-4e-11At2g45630oxidoreductase family proteinO.I.H.G.S.X.
0.4471.90.92PtpAffx.85115.1.S1_atDN486881hypothetical protein-1e+0At1g62690unknown proteinO.I.H.G.S.X.
0.4369.70.92Ptp.923.1.A1_atCK089489--8e-1At5g45670GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.4268.60.93Ptp.3760.1.S1_atBU886519hypothetical protein-2e+0At5g37900seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.3863.70.92Ptp.2232.1.S1_atCK089340--5e+0At4g11040protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3661.60.93PtpAffx.78779.1.S1_atBU885301--8e-2At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.3559.70.93PtpAffx.37524.2.S1_a_atDN489186hypothetical protein-2e+0At4g31940CYP82C4O.I.H.G.S.X.
0.3153.70.93PtpAffx.35480.1.S1_atBU837763hypothetical protein-8e-11At1g18160protein kinase family proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.31469.1.A1_atDN493005hypothetical protein-2e-40At1g66460protein kinase family proteinO.I.H.G.S.X.
0.3052.00.95PtpAffx.63997.1.S1_atCK097910hypothetical protein-5e-13At3g06550-O.I.H.G.S.X.
0.2950.50.92Ptp.3926.1.S1_atDN488871hypothetical protein-5e-1At5g52130unknown proteinO.I.H.G.S.X.
0.2645.20.92Ptp.2929.1.S1_atBU835620hypothetical protein-8e+0At5g44580unknown proteinO.I.H.G.S.X.
0.1932.70.94Ptp.3991.1.S1_atDN488960--7e-81At5g19050unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.297.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.590.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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