Co-expression analysis

Gene ID PtpAffx.1980.3.A1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g27380: unknown protein (HF=3e-4)
Module size 6 genes
NF 0.79
%ile 98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.96PtpAffx.1980.3.A1_a_atCV246685hypothetical protein-3e-4At4g27380unknown proteinO.I.H.G.S.X.
0.9199.20.97PtpAffx.1980.1.S1_a_atCV250106hypothetical protein-3e-4At4g27380unknown proteinO.I.H.G.S.X.
0.7393.60.96PtpAffx.30207.1.S1_s_atCV257448hypothetical protein-2e-61At3g11730ATFP8O.I.H.G.S.X.
0.7393.60.96Ptp.6781.1.S1_s_atBU832419hypothetical protein-5e-23At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.H.G.S.X.
0.6086.00.97PtpAffx.10545.1.S1_atCK096379hypothetical protein-5e-26At5g38630ACYB-1O.I.H.G.S.X.
0.4471.90.97PtpAffx.11488.1.S1_atCV244200hypothetical protein-6e-49At4g31720TAFII15 (TBP-ASSOCIATED FACTOR II 15)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.0GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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