CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.19666.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g09795: ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) (HF=3e-33)

Module size 12 genes

NF 0.55

%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.62 87.2 0.95 PtpAffx.19666.1.A1_at CV229370 hypothetical protein - 3e-33 At1g09795 ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) O.I. H.G. S.X.
0.77 94.9 0.96 PtpAffx.211801.1.S1_at pmrna23142 hypothetical protein - 3e-62 At4g02990 mitochondrial transcription termination factor family protein / mTERF family protein O.I. H.G. S.X.
0.70 91.7 0.97 PtpAffx.202423.1.S1_at pmrna4863 hypothetical protein - 8e-78 At4g01690 PPOX O.I. H.G. S.X.
0.60 86.0 0.96 PtpAffx.129242.1.S1_a_at BU878116 hypothetical protein - 3e-10 At3g17800 - O.I. H.G. S.X.
0.56 83.9 0.94 PtpAffx.129242.1.S1_at BU878116 hypothetical protein - 3e-10 At3g17800 - O.I. H.G. S.X.
0.55 82.2 0.97 PtpAffx.202380.1.S1_s_at pmrna4781 hypothetical protein - 1e-159 At1g02560 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) O.I. H.G. S.X.
0.52 79.4 0.96 Ptp.2200.1.A1_s_at CV260845 hypothetical protein - 2e-34 At4g27990 YGGT family protein O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.223286.1.S1_at pmrna41208 hypothetical protein - 7e-27 At2g02500 ISPD O.I. H.G. S.X.
0.48 75.4 0.96 PtpAffx.214213.1.S1_at pmrna27657 hypothetical protein - 9e-50 At2g31170 SYCO ARATH O.I. H.G. S.X.
0.42 68.6 0.95 PtpAffx.128269.1.S1_s_at CV131019 hypothetical protein - 4e-1 At3g06180 structural constituent of ribosome O.I. H.G. S.X.
0.40 67.0 0.98 PtpAffx.221485.1.S1_at pmrna38388 hypothetical protein - 4e-45 At1g15730 PRLI-interacting factor L, putative O.I. H.G. S.X.
0.38 63.7 0.95 PtpAffx.105870.1.S1_s_at CX185498 hypothetical protein - 6e-9 At2g02500 ISPD O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.1 98.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7 85.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage