Co-expression analysis

Gene ID	PtpAffx.1941.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g24800: PRT1 (PROTEOLYSIS 1) (HF=6e-1)
Module size	8 genes
NF	0.56
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	68.6	0.94	PtpAffx.1941.1.S1_a_at	CK089676	-	-	6e-1	At3g24800	PRT1 (PROTEOLYSIS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.75	94.1	0.96	PtpAffx.56274.1.S1_at	CV271474	hypothetical protein	-	1e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.38112.1.S1_at	CV225830	-	-	4e+0	At5g47090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	Ptp.2616.1.S1_at	CK091924	-	-	1e-1	At5g11600	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.95	Ptp.6903.1.S1_at	DN484668	hypothetical protein	-	7e+0	Atmg00750	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.46700.1.S1_at	CK097073	-	-	3e-5	At3g19190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.9409.2.S1_a_at	CV249779	hypothetical protein	-	1e-2	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.4563.1.S1_at	DN490347	hypothetical protein	-	2e-19	At4g39100	SHL1 (short life)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	88.6	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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