Co-expression analysis

Gene ID	PtpAffx.19408.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g26340: 20S proteasome beta subunit E, putative (HF=3e-70)
Module size	6 genes
NF	0.55
%ile	86.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.19408.1.S1_a_at	CV255062	hypothetical protein	-	3e-70	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.97	Ptp.1978.2.S1_s_at	CN520069	hypothetical protein	-	3e-57	At1g47250	PAF2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	PtpAffx.5795.1.S1_s_at	CV280737	hypothetical protein	-	5e-106	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.4448.1.S1_s_at	BU875199	hypothetical protein	-	1e-75	At3g27430	PBB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.9327.3.A1_a_at	CK095597	hypothetical protein	-	6e-25	At1g56450	PBG1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.97	PtpAffx.110867.1.S1_s_at	CX656712	hypothetical protein	-	4e-99	At3g53230	cell division cycle protein 48, putative / CDC48, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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