Co-expression analysis

Gene ID	PtpAffx.19145.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g32551: LUG (LEUNIG) (HF=4e-11)
Module size	11 genes
NF	0.36
%ile	62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	91.5	0.95	PtpAffx.19145.1.S1_at	CV241624	hypothetical protein	-	4e-11	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.97	PtpAffx.3918.1.A1_at	CV262306	hypothetical protein	-	3e+0	At4g21570	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.8027.1.A1_a_at	BP936489	hypothetical protein	-	2e-7	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	PtpAffx.11716.2.S1_a_at	CV245206	-	-	2e-18	At1g30970	SUF4 (suppressor of FRIGIDA4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.96	PtpAffx.19286.1.S1_at	CV245610	hypothetical protein	-	3e-2	At1g77230	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.97	Ptp.1074.1.S1_s_at	CF233114	hypothetical protein	-	7e-25	At4g25970	PSD3 (phosphatidylserine decarboxylase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.200969.1.S1_at	pmrna1897	hypothetical protein	-	5e-18	At5g19130	GPI transamidase component family protein / Gaa1-like family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.85079.1.S1_at	CV245771	hypothetical protein	-	7e-3	At2g35510	SRO1 (SIMILAR TO RCD ONE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.133177.1.S1_at	DN486854	serine/threonine protein kinase PBS1	-	3e-37	At5g18610	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.96	PtpAffx.32910.3.A1_a_at	CK095573	hypothetical protein	-	4e-35	At5g09860	nuclear matrix protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.4450.3.S1_at	BU870188	hypothetical protein	-	4e-1	At2g12200	ligase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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