Co-expression analysis

Gene ID	PtpAffx.18595.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g39020: GCN5-related N-acetyltransferase (GNAT) family protein (HF=2e-19)
Module size	13 genes
NF	0.21
%ile	38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	91.7	0.94	PtpAffx.18595.1.S1_at	BU868736	-	-	2e-19	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.9122.2.A1_at	CV238242	hypothetical protein	-	4e-39	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.97	PtpAffx.83863.1.S1_at	DN484956	hypothetical protein	-	1e-15	At4g17830	peptidase M20/M25/M40 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.5250.1.A1_a_at	CV255920	hypothetical protein	-	1e+0	At5g65130	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	Ptp.3053.1.A1_s_at	BU835460	hypothetical protein	-	1e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.112916.1.A1_at	CV255627	hypothetical protein	-	1e-7	At1g76920	F-box family protein (FBX3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.7148.1.S1_at	CV265829	-	-	2e-25	At3g30390	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.96	Ptp.6410.1.S1_at	CV259044	hypothetical protein	-	4e-10	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.97	Ptp.2229.1.S1_at	CV243847	hypothetical protein	-	1e-39	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	PtpAffx.99678.1.S1_s_at	BI122813	hypothetical protein	-	3e-2	At4g02350	exocyst complex subunit Sec15-like family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.97	Ptp.6768.1.S1_at	CV268525	hypothetical protein	-	1e-56	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.95	PtpAffx.104221.2.S1_a_at	CF233842	hypothetical protein	-	4e-1	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.95	Ptp.3067.1.S1_s_at	AJ744954.1	iaa-amino acid hydrolase 11	-	9e-44	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	88.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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