Co-expression analysis

Gene ID PtpAffx.18585.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g05230: ubiquitin family protein (HF=2e+0)
Module size 6 genes
NF 0.38
%ile 65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.89PtpAffx.18585.1.A1_atCV241884--2e+0At4g05230ubiquitin family proteinO.I.H.G.S.X.
0.8397.00.92PtpAffx.5514.7.A1_a_atCV245932hypothetical protein-1e+0At1g21323unknown proteinO.I.H.G.S.X.
0.4268.60.90Ptp.4442.1.S1_atCV226738hypothetical protein-2e-31At4g14130XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)O.I.H.G.S.X.
0.4067.00.93PtpAffx.209405.1.S1_atpmrna18629hypothetical protein-8e-48At2g28320pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinO.I.H.G.S.X.
0.2950.50.92PtpAffx.3645.1.S1_atBP934882catalase-0At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.1626.90.89PtpAffx.143637.1.S1_atDN491542--2e+0At5g62950catalytic/ nucleotide bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.697.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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