Co-expression analysis

Gene ID	PtpAffx.18585.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g05230: ubiquitin family protein (HF=2e+0)
Module size	6 genes
NF	0.38
%ile	65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.89	PtpAffx.18585.1.A1_at	CV241884	-	-	2e+0	At4g05230	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.92	PtpAffx.5514.7.A1_a_at	CV245932	hypothetical protein	-	1e+0	At1g21323	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.90	Ptp.4442.1.S1_at	CV226738	hypothetical protein	-	2e-31	At4g14130	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.209405.1.S1_at	pmrna18629	hypothetical protein	-	8e-48	At2g28320	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.92	PtpAffx.3645.1.S1_at	BP934882	catalase	-	0	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.89	PtpAffx.143637.1.S1_at	DN491542	-	-	2e+0	At5g62950	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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